daily tag quicklook update
wrc
2023-08-09
1 setup
Run this daily to get a snapshot of tag stats and health
2 notes
2.1 PATH TO LATEST DATA
# paths to update when you run
portaldir <- "portal_downloads"
datadirss <- list.files(portaldir)
datadir <- file.path(portaldir, datadirss[length(datadirss)])2.2 basic helper function
2.3 load paths adjust as needed
2.4 Import data from wildlife portal and the goniometer. Merge the two stacks.
3 tag summary
| ptt | hex | serial | tag_model | deployid | catalog_ID_DUML | BRS_season | deploydate_yyyymmdd | deploytime_hhmm | species | location | tagger | permit | tagtype | longitude | latitude | tagside | taglocation | taglocationnotes | programming_basic_descriptor | notes | recorder | age | sex | agesex_conf | headshot | agesex_reason | appearance_notes | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4 | 220740 | 2C2704C | NA | SPLASH10-333 | ZcTag136_DUML | NA | brs10 | 20230725 | 1321 | Zca | Hat | dlw | NA | NA | NA | NA | L | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 5 | 220736 | 2C27000 | NA | SPLASH10-333 | ZcTag137_DUML | NA | brs10 | 20230725 | 1449 | Zca | Hat | dlw | NA | NA | NA | NA | L | NA | NA | NA | NA | NA | a | f | high | y | mother calf | NA |
| 6 | 220743 | 2C27079 | NA | SPLASH10-333 | ZcTag138_DUML | NA | brs10 | 20230725 | 1924 | Zca | Hat | dlw | NA | NA | NA | NA | R | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 1 | 220745 | 2C27098 | NA | SPLASH10-333 | ZcTag139_DUML | NA | brs10 | 20230726 | 1638 | Zca | Hat | dlw | NA | NA | NA | NA | R | NA | NA | NA | NA | NA | u | u | y | NA | ||
| 2 | 233112 | 406B18B | NA | SPLASH10-333 | ZcTag140_DUML | NA | brs10 | 20230726 | 1958 | Zca | Hat | dlw | NA | NA | NA | NA | R | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 3 | 233115 | 406B1BE | NA | SPLASH10-333 | ZcTag141_DUML | NA | brs10 | 20230726 | 2027 | Zca | Hat | dlw | NA | NA | NA | NA | L | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 9 | 233118 | 406B1E1 | NA | SPLASH10-333 | ZcTag142_DUML | NA | brs10 | 20230807 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | |||||||||
| 8 | 233110 | 406B16A | NA | SPLASH10-F-333 | ZcTag143_DUML | NA | brs10 | 20230807 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | |||||||||
| 7 | 233111 | 406B179 | NA | SPLASH10-F-333 | ZcTag144_DUML | NA | brs10 | 20230807 | NA | Zca | Hat | dlw | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
4 calculate stats
5 summaries
5.1 status and corrupt
| deployid | ptt | nmsg | ncrc | transmits | battvoltrange | zerodepthrange | last_sta_recieved | ncorrupt | |
|---|---|---|---|---|---|---|---|---|---|
| 2 | ZcTag136_DUML | 220740 | 46 | 46 | 6728 | 3.248 to 3.568 | -13 to 4 | 2023-08-09 11:26:46 | 118 |
| 1 | ZcTag137_DUML | 220736 | 13 | 12 | 3755 | 3.376 to 3.504 | 1 to 3 | 2023-08-04 12:49:36 | 186 |
| 3 | ZcTag138_DUML | 220743 | 10 | 6 | 871 | 3.568 to 3.568 | 2 to 3 | 2023-08-07 14:30:41 | 318 |
| 4 | ZcTag139_DUML | 220745 | 11 | 11 | 4143 | 3.504 to 3.568 | -37 to 1 | 2023-08-07 14:31:02 | 107 |
| 7 | ZcTag140_DUML | 233112 | 7 | 7 | 1188 | 3.44 to 3.504 | 1 to 3 | 2023-08-02 11:16:31 | 81 |
| 8 | ZcTag141_DUML | 233115 | 16 | 15 | 1702 | 3.504 to 3.504 | 1 to 3 | 2023-07-30 14:31:55 | 52 |
| 9 | ZcTag142_DUML | 233118 | 6 | 6 | 408 | 3.44 to 3.504 | 3 to 5 | 2023-08-07 15:34:58 | 32 |
| 5 | ZcTag143_DUML | 233110 | 0 | 0 | 0 | 16 | |||
| 6 | ZcTag144_DUML | 233111 | 0 | 0 | 0 | 20 |
5.2 locations
| deployid | ptt | nloc | nz | na | nb | n0 | n1 | n2 | n3 | last_loc_recieved | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 2 | ZcTag136_DUML | 220740 | 246 | 1 | 15 | 53 | 117 | 40 | 14 | 6 | 2023-08-09 11:27:34 |
| 1 | ZcTag137_DUML | 220736 | 209 | 1 | 27 | 78 | 61 | 32 | 8 | 2 | 2023-08-09 11:38:28 |
| 3 | ZcTag138_DUML | 220743 | 202 | 0 | 34 | 106 | 29 | 24 | 6 | 3 | 2023-08-09 11:31:20 |
| 4 | ZcTag139_DUML | 220745 | 152 | 1 | 19 | 95 | 27 | 6 | 2 | 2 | 2023-08-08 23:40:19 |
| 7 | ZcTag140_DUML | 233112 | 71 | 1 | 13 | 31 | 19 | 4 | 3 | 0 | 2023-08-02 11:15:31 |
| 8 | ZcTag141_DUML | 233115 | 63 | 1 | 10 | 20 | 24 | 7 | 1 | 0 | 2023-07-30 17:41:17 |
| 9 | ZcTag142_DUML | 233118 | 22 | 0 | 4 | 5 | 8 | 3 | 2 | 0 | 2023-08-09 10:02:59 |
| 5 | ZcTag143_DUML | 233110 | 18 | 0 | 3 | 9 | 5 | 1 | 0 | 0 | 2023-08-09 09:55:24 |
| 6 | ZcTag144_DUML | 233111 | 15 | 0 | 4 | 7 | 4 | 0 | 0 | 0 | 2023-08-09 09:56:26 |
5.3 behavior
| deployid | ptt | n_beh_msgs | totalbeh_time_hours | nbehgaps | behgap_time_hours | latest_beh_recieved | |
|---|---|---|---|---|---|---|---|
| 2 | ZcTag136_DUML | 220740 | 0 | 0 | 0 | 0 | |
| 1 | ZcTag137_DUML | 220736 | 0 | 0 | 0 | 0 | |
| 3 | ZcTag138_DUML | 220743 | 0 | 0 | 0 | 0 | |
| 4 | ZcTag139_DUML | 220745 | 0 | 0 | 0 | 0 | |
| 7 | ZcTag140_DUML | 233112 | 0 | 0 | 0 | 0 | |
| 8 | ZcTag141_DUML | 233115 | 0 | 0 | 0 | 0 | |
| 9 | ZcTag142_DUML | 233118 | 0 | 0 | 0 | 0 | |
| 5 | ZcTag143_DUML | 233110 | 0 | 0 | 0 | 0 | |
| 6 | ZcTag144_DUML | 233111 | 0 | 0 | 0 | 0 |
5.4 series
this doesn’t count the messages quite right for some reason, but you get the idea. you can scroll down below and see the plot of messages receieved.
| deployid | ptt | n_ser_msgs | totalser_time_hours | nsergaps | sergap_time_hours | nsermsggaps | latest_ser_recieved | |
|---|---|---|---|---|---|---|---|---|
| 2 | ZcTag136_DUML | 220740 | 83 | 332 | 2 | 16 | 4 | 2023-08-09 |
| 1 | ZcTag137_DUML | 220736 | 70 | 280 | 3 | 40 | 10 | 2023-08-07 20:00:00 |
| 3 | ZcTag138_DUML | 220743 | 37 | 148 | 18 | 120 | 30 | 2023-08-05 20:00:00 |
| 4 | ZcTag139_DUML | 220745 | 40 | 156 | 12 | 124 | 31 | 2023-08-07 |
| 7 | ZcTag140_DUML | 233112 | 19 | 76 | 6 | 40 | 10 | 2023-07-31 16:00:00 |
| 8 | ZcTag141_DUML | 233115 | 16 | 64 | 3 | 28 | 7 | 2023-07-30 16:00:00 |
| 9 | ZcTag142_DUML | 233118 | 6 | 24 | 2 | 8 | 2 | 2023-08-08 20:00:00 |
| 5 | ZcTag143_DUML | 233110 | 6 | 24 | 1 | 8 | 2 | 2023-08-09 |
| 6 | ZcTag144_DUML | 233111 | 2 | 8 | 1 | 4 | 1 | 2023-08-08 08:00:00 |
5.5 fastloc
| deployid | ptt | fastloc_received | fastloc_locnum | fastloc_failures | fastloc_latest |
|---|---|---|---|---|---|
| ZcTag137_DUML | 220736 | 0 | 0 | 0 | 0 |
| ZcTag136_DUML | 220740 | 0 | 0 | 0 | 0 |
| ZcTag138_DUML | 220743 | 0 | 0 | 0 | 0 |
| ZcTag139_DUML | 220745 | 0 | 0 | 0 | 0 |
| ZcTag143_DUML | 233110 | 3 | 2 | 15 | 08-Aug-2023 21:30:03 |
| ZcTag144_DUML | 233111 | 2 | 3 | 7 | 08-Aug-2023 21:09:52 |
| ZcTag140_DUML | 233112 | 0 | 0 | 0 | 0 |
| ZcTag141_DUML | 233115 | 0 | 0 | 0 | 0 |
| ZcTag142_DUML | 233118 | 0 | 0 | 0 | 0 |
6 position snapshot
Plot of the last four positions for all the tags which have generated an argos position within the last 3 days
7 plot pressure sensors
PROVISIONAL plot status cutoffs and bat voltage. Cutoffs are in dotted red lines. These are either:
- healthy tags: the last status messages as a conservative cutoff and on tags that are still actively transmitting this is likely to increase
- unhealthy pressure transducer tags: if there are 2 status messages (crc’d) where the | zerodepth | > 10 then this is the last good status message before the 1st of those two bad messages.
We have settled on a more complicated cutoff system to capture a little more very likely good data. For detail please see DATAPREP_sattag_processing. But this gives you a general idea of approx. cutoffs and pressure transducer health.
8 control cee
8.1 +/- 12 hour look at ship based cee 23_01 on 20220804
gonio hits in purple
9 series message source plots
